1 Response_reg#1
214-330 aa · 117 aa · 33.9% of protein
Raw token
Response_reg:214:4.68e-26:330:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS11505
Response regulator, unclassified
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeunclassifiedLength345 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003481505#DXB70_RS11505Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 345 aa (33.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa345 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:214:4.68e-26:330:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003481505::NZ_QULJ01000009.1::G00032
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span115262-118422Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_11510RefSeq proteinWP_147354053.1
Context group ID
GCF_003481505::NZ_QULJ01000009.1::G00032Context members
DXB70_RS11490DXB70_RS11495DXB70_RS11505
Partner locus tags
DXB70_RS11490DXB70_RS11495DXB70_RS11505
Partner old locus tags
DXB70_11495DXB70_11500DXB70_11510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147354053.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS11505Primary locus identifier stored in the genes table.
Old locus tagDXB70_11510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000009.1Sequence record reported by the local genomic context database.
Genomic interval117 385-118 422 nt1 038 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 262-118 422 ntGCF_003481505::NZ_QULJ01000009.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000009.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span115 262-118 422 nt3 161 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 262 nt118 422 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DXB70_RS11490GCF_003481505#DXB70_RS11490
HKClassic
115 262-116 527 nt · Reverse (-)
DXB70_RS11495GCF_003481505#DXB70_RS11495
RROmpR
116 503-117 192 nt · Reverse (-)
DXB70_RS11505GCF_003481505#DXB70_RS11505
RRunclassifiedCurrent focus
117 385-118 422 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481505#DXB70_RS11505The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0492940
Simplified PFAM architecture for RROC_0492940
PFAM domain coverage: 232 / 345 aa (67.2%)
1 aa345 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[71-186] | Response_reg[214-329]
- Domain count: 2
- Matched identifier: RROC_0492940
- Positioned domains: HATPase_c 71-186 ; HATPase_c 71-186 ; Response_reg 214-329 ; Response_reg 214-329
Cluster members and taxonomy
Representative gene: GCF_003481505#DXB70_RS11505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key