1 HisKA#1
432-496 aa · 65 aa · 9.8% of protein
Raw token
HisKA:432:0.00000000000554:496:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS00495
Histidine kinase, Classic
Clostridium sp. OM05-5BH · GCF_003481505
ClassHKTypeClassicLength660 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS00495Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length660 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 660 aa (27.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa660 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
543-655 aa · 113 aa · 17.1% of protein
Raw token
HATPase_c:543:1.01e-27:655:113:109- Raw architecture: HisKA:432:0.00000000000554:496:65:64#HATPase_c:543:1.01e-27:655:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103996-106672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_00495RefSeq proteinWP_118672482.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00002Context members
DXB70_RS00490DXB70_RS00495
Partner locus tags
DXB70_RS00490DXB70_RS00495
Partner old locus tags
DXB70_00490DXB70_00495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118672482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS00495Primary locus identifier stored in the genes table.
Old locus tagDXB70_00495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval104 690-106 672 nt1 983 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 996-106 672 ntGCF_003481505::NZ_QULJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span103 996-106 672 nt2 677 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 996 nt106 672 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS00490GCF_003481505#DXB70_RS00490
RROmpR
103 996-104 697 nt · Reverse (-)
DXB70_RS00495GCF_003481505#DXB70_RS00495
HKClassicCurrent focus
104 690-106 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479845#DWV17_RS05750Use this link to inspect the representative gene detail.
PFAM architectureUsp + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0872525
Simplified PFAM architecture for HKOC_0872525
PFAM domain coverage: 382 / 660 aa (57.9%)
1 aa660 aa
UspDUF4118HisKAHATPase_c
- Simplified architecture: Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: Usp[11-109] | DUF4118[162-268] | HisKA[432-496] | HATPase_c[544-654]
- Domain count: 4
- Matched identifier: HKOC_0872525
- Positioned domains: Usp 11-109 ; DUF4118 162-268 ; HisKA 432-496 ; HATPase_c 544-654
Cluster members and taxonomy
Representative gene: GCF_003479845#DWV17_RS05750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key