1 HisKA#1
197-265 aa · 69 aa · 16.4% of protein
Raw token
HisKA:197:0.000000000000582:265:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS00860
Histidine kinase, Classic
Clostridium sp. OM05-5BH · GCF_003481505
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS00860Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 421 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-419 aa · 111 aa · 26.4% of protein
Raw token
HATPase_c:309:2.75e-26:419:112:109- Raw architecture: HisKA:197:0.000000000000582:265:69:64#HATPase_c:309:2.75e-26:419:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184666-186643Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_00860RefSeq proteinWP_118672508.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00004Context members
DXB70_RS00855DXB70_RS00860
Partner locus tags
DXB70_RS00855DXB70_RS00860
Partner old locus tags
DXB70_00855DXB70_00860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118672508.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS00860Primary locus identifier stored in the genes table.
Old locus tagDXB70_00860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval185 378-186 643 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 666-186 643 ntGCF_003481505::NZ_QULJ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 666-186 643 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 666 nt186 643 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS00855GCF_003481505#DXB70_RS00855
RROmpR
184 666-185 376 nt · Reverse (-)
DXB70_RS00860GCF_003481505#DXB70_RS00860
HKClassicCurrent focus
185 378-186 643 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481505#DXB70_RS00860The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258609
Simplified PFAM architecture for HKOC_2258609
PFAM domain coverage: 287 / 421 aa (68.2%)
1 aa421 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[76-185] | HisKA[198-264] | HATPase_c[310-419]
- Domain count: 3
- Matched identifier: HKOC_2258609
- Positioned domains: DUF4118 76-185 ; HisKA 198-264 ; HATPase_c 310-419
Cluster members and taxonomy
Representative gene: GCF_003481505#DXB70_RS00860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key