1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:4.36e-33:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS00230
Response regulator OmpR family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS00230Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:147:2.29e-26:219:75:77- Raw architecture: Response_reg:4:4.36e-33:113:110:111#Trans_reg_C:147:2.29e-26:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43241-44955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_00230RefSeq proteinWP_107000933.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00001Context members
DXB70_RS00230DXB70_RS00235
Partner locus tags
DXB70_RS00230DXB70_RS00235
Partner old locus tags
DXB70_00230DXB70_00235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107000933.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X0Y2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X0Y2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS00230Primary locus identifier stored in the genes table.
Old locus tagDXB70_00230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval43 241-43 912 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 241-44 955 ntGCF_003481505::NZ_QULJ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span43 241-44 955 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 241 nt44 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS00230GCF_003481505#DXB70_RS00230
RROmpRCurrent focus
43 241-43 912 nt · Forward (+)
DXB70_RS00235GCF_003481505#DXB70_RS00235
HKClassic
43 912-44 955 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS08640Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1598887
Simplified PFAM architecture for RROC_1598887
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1598887
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS08640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key