1 HisKA#1
373-439 aa · 67 aa · 8.7% of protein
Raw token
HisKA:373:6.77e-17:439:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS11455
Histidine kinase, Hybrid
Clostridium sp. OM05-5BH · GCF_003481505
ClassHKTypeHybridLength769 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS11455Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length769 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 769 aa (39.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa769 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
486-604 aa · 119 aa · 15.5% of protein
Raw token
HATPase_c:486:2.34e-29:604:119:1093 Response_reg#3
632-748 aa · 117 aa · 15.2% of protein
Raw token
Response_reg:632:3.28e-26:748:117:111- Raw architecture: HisKA:373:6.77e-17:439:67:64#HATPase_c:486:2.34e-29:604:119:109#Response_reg:632:3.28e-26:748:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000009.1::G00030
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span101536-106723Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_11460RefSeq proteinWP_347559617.1
Context group ID
GCF_003481505::NZ_QULJ01000009.1::G00030Context members
DXB70_RS11450DXB70_RS11455
Partner locus tags
DXB70_RS11450DXB70_RS11455
Partner old locus tags
DXB70_11455DXB70_11460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_347559617.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS11455Primary locus identifier stored in the genes table.
Old locus tagDXB70_11460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000009.1Sequence record reported by the local genomic context database.
Genomic interval104 414-106 723 nt2 310 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 536-106 723 ntGCF_003481505::NZ_QULJ01000009.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000009.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span101 536-106 723 nt5 188 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 536 nt106 723 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS11450GCF_003481505#DXB70_RS11450
HKHybrid
101 536-104 364 nt · Reverse (-)
DXB70_RS11455GCF_003481505#DXB70_RS11455
HKHybridCurrent focus
104 414-106 723 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481505#DXB70_RS11455The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0622263
Simplified PFAM architecture for HKOC_0622263
PFAM domain coverage: 300 / 769 aa (39.0%)
1 aa769 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[373-439] | HATPase_c[487-603] | Response_reg[632-747]
- Domain count: 3
- Matched identifier: HKOC_0622263
- Positioned domains: HisKA 373-439 ; HATPase_c 487-603 ; Response_reg 632-747
Cluster members and taxonomy
Representative gene: GCF_003481505#DXB70_RS11455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key