1 Response_reg#1
4-116 aa · 113 aa · 49.3% of protein
Raw token
Response_reg:4:1.62e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS11140
Response regulator, unclassified
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeunclassifiedLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481505#DXB70_RS11140Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_IclR
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 229 aa (68.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_IclRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HTH_IclR#2
161-204 aa · 44 aa · 19.2% of protein
Raw token
HTH_IclR:161:0.0000102:204:44:49- Raw architecture: Response_reg:4:1.62e-25:116:113:111#HTH_IclR:161:0.0000102:204:44:49
- Domain description: 1 Response_reg,1 HTH_IclR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481505::NZ_QULJ01000009.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25651-26340Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_11145RefSeq proteinWP_117795944.1
Context group ID
GCF_003481505::NZ_QULJ01000009.1::G00029Context members
DXB70_RS11140
Partner locus tags
DXB70_RS11140
Partner old locus tags
DXB70_11145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117795944.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS11140Primary locus identifier stored in the genes table.
Old locus tagDXB70_11145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000009.1Sequence record reported by the local genomic context database.
Genomic interval25 651-26 340 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 651-26 340 ntGCF_003481505::NZ_QULJ01000009.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000009.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span25 651-26 340 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 651 nt26 340 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB70_RS11140GCF_003481505#DXB70_RS11140
RRunclassifiedCurrent focus
25 651-26 340 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003461685#DWV73_RS04210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1261071
Simplified PFAM architecture for RROC_1261071
PFAM domain coverage: 112 / 229 aa (48.9%)
1 aa229 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1261071
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_003461685#DWV73_RS04210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key