1 HAMP#1
65-134 aa · 70 aa · 18.5% of protein
Raw token
HAMP:65:0.00000000165:134:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS09650
Histidine kinase, Classic
Clostridium sp. OM05-5BH · GCF_003481505
ClassHKTypeClassicLength379 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS09650Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length379 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 379 aa (64.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa379 aa
Domain-by-domain annotation3 items
2 HisKA#2
146-212 aa · 67 aa · 17.7% of protein
Raw token
HisKA:146:3.2e-17:212:67:643 HATPase_c#3
258-366 aa · 109 aa · 28.8% of protein
Raw token
HATPase_c:258:5.68e-29:366:110:109- Raw architecture: HAMP:65:0.00000000165:134:70:69#HisKA:146:3.2e-17:212:67:64#HATPase_c:258:5.68e-29:366:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000006.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174872-176705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_09655RefSeq proteinWP_333490916.1
Context group ID
GCF_003481505::NZ_QULJ01000006.1::G00026Context members
DXB70_RS09645DXB70_RS09650
Partner locus tags
DXB70_RS09645DXB70_RS09650
Partner old locus tags
DXB70_09650DXB70_09655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_333490916.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS09650Primary locus identifier stored in the genes table.
Old locus tagDXB70_09655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000006.1Sequence record reported by the local genomic context database.
Genomic interval175 566-176 705 nt1 140 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span174 872-176 705 ntGCF_003481505::NZ_QULJ01000006.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000006.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span174 872-176 705 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 872 nt176 705 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS09645GCF_003481505#DXB70_RS09645
RROmpR
174 872-175 576 nt · Forward (+)
DXB70_RS09650GCF_003481505#DXB70_RS09650
HKClassicCurrent focus
175 566-176 705 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS12165Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2620126
Simplified PFAM architecture for HKOC_2620126
PFAM domain coverage: 221 / 379 aa (58.3%)
1 aa379 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[87-133] | HisKA[146-211] | HATPase_c[259-366]
- Domain count: 3
- Matched identifier: HKOC_2620126
- Positioned domains: HAMP 87-133 ; HisKA 146-211 ; HATPase_c 259-366
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS12165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key