1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:3.99e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS09645
Response regulator OmpR family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS09645Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:156:3.4e-33:232:77:77- Raw architecture: Response_reg:6:3.99e-37:115:111:111#Trans_reg_C:156:3.4e-33:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000006.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174872-176705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_09650RefSeq proteinWP_022360295.1
Context group ID
GCF_003481505::NZ_QULJ01000006.1::G00026Context members
DXB70_RS09645DXB70_RS09650
Partner locus tags
DXB70_RS09645DXB70_RS09650
Partner old locus tags
DXB70_09650DXB70_09655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022360295.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FMN9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FMN9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS09645Primary locus identifier stored in the genes table.
Old locus tagDXB70_09650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000006.1Sequence record reported by the local genomic context database.
Genomic interval174 872-175 576 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span174 872-176 705 ntGCF_003481505::NZ_QULJ01000006.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000006.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span174 872-176 705 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 872 nt176 705 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS09645GCF_003481505#DXB70_RS09645
RROmpRCurrent focus
174 872-175 576 nt · Forward (+)
DXB70_RS09650GCF_003481505#DXB70_RS09650
HKClassic
175 566-176 705 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS10595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049017
Simplified PFAM architecture for RROC_1049017
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1049017
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS10595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key