1 Response_reg#1
6-116 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:6:8.41e-34:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS08415
Response regulator OmpR family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS08415Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:148:5.92e-33:221:77:77- Raw architecture: Response_reg:6:8.41e-34:116:112:111#Trans_reg_C:148:5.92e-33:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151531-153962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_08420RefSeq proteinWP_022359328.1
Context group ID
GCF_003481505::NZ_QULJ01000005.1::G00024Context members
DXB70_RS08415DXB70_RS08420
Partner locus tags
DXB70_RS08415DXB70_RS08420
Partner old locus tags
DXB70_08420DXB70_08425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022359328.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X1H5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X1H5_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS08415Primary locus identifier stored in the genes table.
Old locus tagDXB70_08420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval151 531-152 208 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span151 531-153 962 ntGCF_003481505::NZ_QULJ01000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span151 531-153 962 nt2 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 531 nt153 962 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS08415GCF_003481505#DXB70_RS08415
RROmpRCurrent focus
151 531-152 208 nt · Forward (+)
DXB70_RS08420GCF_003481505#DXB70_RS08420
HKClassic
152 205-153 962 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS05195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466475
Simplified PFAM architecture for RROC_1466475
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1466475
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS05195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key