1 Response_reg#1
5-127 aa · 123 aa · 50.8% of protein
Raw token
Response_reg:5:2.98e-22:127:123:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS06280
Response regulator OmpR family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS06280Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 242 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-234 aa · 74 aa · 30.6% of protein
Raw token
Trans_reg_C:161:7.2e-35:234:77:77- Raw architecture: Response_reg:5:2.98e-22:127:123:111#Trans_reg_C:161:7.2e-35:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000003.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338792-340928Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_06285RefSeq proteinWP_118672894.1
Context group ID
GCF_003481505::NZ_QULJ01000003.1::G00019Context members
DXB70_RS06275DXB70_RS06280
Partner locus tags
DXB70_RS06275DXB70_RS06280
Partner old locus tags
DXB70_06280DXB70_06285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118672894.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS06280Primary locus identifier stored in the genes table.
Old locus tagDXB70_06285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval340 200-340 928 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span338 792-340 928 ntGCF_003481505::NZ_QULJ01000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span338 792-340 928 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 792 nt340 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS06275GCF_003481505#DXB70_RS06275
HKClassic
338 792-340 192 nt · Reverse (-)
DXB70_RS06280GCF_003481505#DXB70_RS06280
RROmpRCurrent focus
340 200-340 928 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481505#DXB70_RS06280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0848588
Simplified PFAM architecture for RROC_0848588
PFAM domain coverage: 193 / 242 aa (79.8%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-126] | Trans_reg_C[164-234]
- Domain count: 2
- Matched identifier: RROC_0848588
- Positioned domains: Response_reg 5-126 ; Response_reg 5-126 ; Trans_reg_C 164-234 ; Trans_reg_C 164-234
Cluster members and taxonomy
Representative gene: GCF_003481505#DXB70_RS06280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key