1 HisKA#1
184-248 aa · 65 aa · 11.1% of protein
Raw token
HisKA:184:8.29e-16:248:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS04075
Histidine kinase, Hybrid
Clostridium sp. OM05-5BH · GCF_003481505
ClassHKTypeHybridLength586 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481505#DXB70_RS04075Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 586 aa (50.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
296-412 aa · 117 aa · 20.0% of protein
Raw token
HATPase_c:296:1.01e-27:412:117:1093 Response_reg#3
440-552 aa · 113 aa · 19.3% of protein
Raw token
Response_reg:440:1.65e-22:552:113:111- Raw architecture: HisKA:184:8.29e-16:248:65:64#HATPase_c:296:1.01e-27:412:117:109#Response_reg:440:1.65e-22:552:113:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481505::NZ_QULJ01000002.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span346029-347789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_04075RefSeq proteinWP_118672707.1
Context group ID
GCF_003481505::NZ_QULJ01000002.1::G00016Context members
DXB70_RS04075
Partner locus tags
DXB70_RS04075
Partner old locus tags
DXB70_04075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118672707.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS04075Primary locus identifier stored in the genes table.
Old locus tagDXB70_04075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval346 029-347 789 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span346 029-347 789 ntGCF_003481505::NZ_QULJ01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span346 029-347 789 nt1 761 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 029 nt347 789 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB70_RS04075GCF_003481505#DXB70_RS04075
HKHybridCurrent focus
346 029-347 789 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481505#DXB70_RS04075The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132433
Simplified PFAM architecture for HKOC_1132433
PFAM domain coverage: 296 / 586 aa (50.5%)
1 aa586 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[185-248] | HATPase_c[296-411] | Response_reg[440-555]
- Domain count: 3
- Matched identifier: HKOC_1132433
- Positioned domains: HisKA 185-248 ; HATPase_c 296-411 ; Response_reg 440-555
Cluster members and taxonomy
Representative gene: GCF_003481505#DXB70_RS04075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key