1 Response_reg#1
4-109 aa · 106 aa · 23.3% of protein
Raw token
Response_reg:4:1.2e-23:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS01425
Response regulator NtrC family
Clostridium sp. OM05-5BH · GCF_003481505
ClassRRTypeNtrCLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS01425Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage265 / 454 aa (58.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 AAA_5#2
160-279 aa · 120 aa · 26.4% of protein
Raw token
AAA_5:160:0.000000343:279:129:1353 HTH_8#3
411-449 aa · 39 aa · 8.6% of protein
Raw token
HTH_8:411:0.00000000911:449:39:40- Raw architecture: Response_reg:4:1.2e-23:109:106:111#AAA_5:160:0.000000343:279:129:135#HTH_8:411:0.00000000911:449:39:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span297517-300273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_01425RefSeq proteinWP_107000771.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00007Context members
DXB70_RS01420DXB70_RS01425
Partner locus tags
DXB70_RS01420DXB70_RS01425
Partner old locus tags
DXB70_01420DXB70_01425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107000771.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3WZU2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3WZU2_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS01425Primary locus identifier stored in the genes table.
Old locus tagDXB70_01425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval298 909-300 273 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span297 517-300 273 ntGCF_003481505::NZ_QULJ01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span297 517-300 273 nt2 757 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 517 nt300 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS01420GCF_003481505#DXB70_RS01420
HKClassic
297 517-298 833 nt · Forward (+)
DXB70_RS01425GCF_003481505#DXB70_RS01425
RRNtrCCurrent focus
298 909-300 273 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024715#C7U56_RS07460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0269424
Simplified PFAM architecture for RROC_0269424
PFAM domain coverage: 379 / 454 aa (83.5%)
1 aa454 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[4-111] | Sigma54_activat[140-304] | AAA_lid_14[309-375] | HTH_8[411-449]
- Domain count: 4
- Matched identifier: RROC_0269424
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Sigma54_activat 140-304 ; Sigma54_activat 140-304 ; AAA_lid_14 309-375 ; AAA_lid_14 309-375 ; HTH_8 411-449 ; HTH_8 411-449
Cluster members and taxonomy
Representative gene: GCF_003024715#C7U56_RS07460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key