1 HAMP#1
144-215 aa · 72 aa · 16.4% of protein
Raw token
HAMP:144:0.00000000567:215:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB70_RS01420
Histidine kinase, Classic
Clostridium sp. OM05-5BH · GCF_003481505
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481505#DXB70_RS01420Stable P2CS identifier used across views.
GenomeGCF_003481505Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 438 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
225-289 aa · 65 aa · 14.8% of protein
Raw token
HisKA:225:0.000000000748:289:65:643 HATPase_c#3
330-434 aa · 105 aa · 24.0% of protein
Raw token
HATPase_c:330:9.94e-26:434:108:109- Raw architecture: HAMP:144:0.00000000567:215:72:69#HisKA:225:0.000000000748:289:65:64#HATPase_c:330:9.94e-26:434:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481505::NZ_QULJ01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span297517-300273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB70_01420RefSeq proteinWP_117796482.1
Context group ID
GCF_003481505::NZ_QULJ01000001.1::G00007Context members
DXB70_RS01420DXB70_RS01425
Partner locus tags
DXB70_RS01420DXB70_RS01425
Partner old locus tags
DXB70_01420DXB70_01425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117796482.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB70_RS01420Primary locus identifier stored in the genes table.
Old locus tagDXB70_01420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QULJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval297 517-298 833 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span297 517-300 273 ntGCF_003481505::NZ_QULJ01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481505::NZ_QULJ01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QULJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span297 517-300 273 nt2 757 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 517 nt300 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB70_RS01420GCF_003481505#DXB70_RS01420
HKClassicCurrent focus
297 517-298 833 nt · Forward (+)
DXB70_RS01425GCF_003481505#DXB70_RS01425
RRNtrC
298 909-300 273 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003461685#DWV73_RS08930Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2094798
Simplified PFAM architecture for HKOC_2094798
PFAM domain coverage: 217 / 438 aa (49.5%)
1 aa438 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-214] | HisKA[225-283] | HATPase_c[331-434]
- Domain count: 3
- Matched identifier: HKOC_2094798
- Positioned domains: HAMP 161-214 ; HisKA 225-283 ; HATPase_c 331-434
Cluster members and taxonomy
Representative gene: GCF_003461685#DWV73_RS08930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 043 · GCF_003481505
AssemblyASM348150v1 · Scaffoldhaploid
Genome composition3 036 263 bp · 48,5% GCClostridium sp. OM05-5BH
Signal transduction countsGenes 58 · HK 30 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key