1 HisKA#1
345-411 aa · 67 aa · 9.1% of protein
Raw token
HisKA:345:0.00000000000000278:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX68_RS04945
Histidine kinase, Hybrid
Clostridium sp. AF20-7 · GCF_003479275
ClassHKTypeHybridLength735 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003479275#DWX68_RS04945Stable P2CS identifier used across views.
GenomeGCF_003479275Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length735 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 735 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa735 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
458-576 aa · 119 aa · 16.2% of protein
Raw token
HATPase_c:458:2.78e-28:576:119:1093 Response_reg#3
600-716 aa · 117 aa · 15.9% of protein
Raw token
Response_reg:600:4.44e-29:716:117:111- Raw architecture: HisKA:345:0.00000000000000278:411:67:64#HATPase_c:458:2.78e-28:576:119:109#Response_reg:600:4.44e-29:716:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003479275::NZ_QUGF01000004.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span98771-100978Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX68_04945RefSeq proteinWP_118628756.1
Context group ID
GCF_003479275::NZ_QUGF01000004.1::G00018Context members
DWX68_RS04945
Partner locus tags
DWX68_RS04945
Partner old locus tags
DWX68_04945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118628756.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX68_RS04945Primary locus identifier stored in the genes table.
Old locus tagDWX68_04945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGF01000004.1Sequence record reported by the local genomic context database.
Genomic interval98 771-100 978 nt2 208 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 771-100 978 ntGCF_003479275::NZ_QUGF01000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479275::NZ_QUGF01000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span98 771-100 978 nt2 208 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 771 nt100 978 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX68_RS04945GCF_003479275#DWX68_RS04945
HKHybridCurrent focus
98 771-100 978 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479275#DWX68_RS04945The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0702273
Simplified PFAM architecture for HKOC_0702273
PFAM domain coverage: 300 / 735 aa (40.8%)
1 aa735 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[460-575] | Response_reg[600-716]
- Domain count: 3
- Matched identifier: HKOC_0702273
- Positioned domains: HisKA 345-411 ; HATPase_c 460-575 ; Response_reg 600-716
Cluster members and taxonomy
Representative gene: GCF_003479275#DWX68_RS04945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 002 · GCF_003479275
AssemblyASM347927v1 · Scaffoldhaploid
Genome composition3 148 106 bp · 48,0% GCClostridium sp. AF20-7
Signal transduction countsGenes 62 · HK 34 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key