1 HisKA#1
551-616 aa · 66 aa · 7.8% of protein
Raw token
HisKA:551:0.0000000000000908:616:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX68_RS00825
Histidine kinase, Classic
Clostridium sp. AF20-7 · GCF_003479275
ClassHKTypeClassicLength847 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479275#DWX68_RS00825Stable P2CS identifier used across views.
GenomeGCF_003479275Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length847 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 847 aa (19.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa847 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
662-762 aa · 101 aa · 11.9% of protein
Raw token
HATPase_c:662:0.00000000238:762:105:109- Raw architecture: HisKA:551:0.0000000000000908:616:66:64#HATPase_c:662:0.00000000238:762:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479275::NZ_QUGF01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span171722-175006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX68_00825RefSeq proteinWP_118628403.1
Context group ID
GCF_003479275::NZ_QUGF01000001.1::G00004Context members
DWX68_RS00825DWX68_RS00830
Partner locus tags
DWX68_RS00825DWX68_RS00830
Partner old locus tags
DWX68_00825DWX68_00830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118628403.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX68_RS00825Primary locus identifier stored in the genes table.
Old locus tagDWX68_00825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGF01000001.1Sequence record reported by the local genomic context database.
Genomic interval171 722-174 265 nt2 544 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span171 722-175 006 ntGCF_003479275::NZ_QUGF01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479275::NZ_QUGF01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span171 722-175 006 nt3 285 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
171 722 nt175 006 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX68_RS00825GCF_003479275#DWX68_RS00825
HKClassicCurrent focus
171 722-174 265 nt · Reverse (-)
DWX68_RS00830GCF_003479275#DWX68_RS00830
RROmpR
174 311-175 006 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479275#DWX68_RS00825The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0495334
Simplified PFAM architecture for HKOC_0495334
PFAM domain coverage: 166 / 847 aa (19.6%)
1 aa847 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[551-616] | HATPase_c[663-762]
- Domain count: 2
- Matched identifier: HKOC_0495334
- Positioned domains: HisKA 551-616 ; HATPase_c 663-762
Cluster members and taxonomy
Representative gene: GCF_003479275#DWX68_RS00825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 002 · GCF_003479275
AssemblyASM347927v1 · Scaffoldhaploid
Genome composition3 148 106 bp · 48,0% GCClostridium sp. AF20-7
Signal transduction countsGenes 62 · HK 34 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key