1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:1.79e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX68_RS00605
Response regulator OmpR family
Clostridium sp. AF20-7 · GCF_003479275
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479275#DWX68_RS00605Stable P2CS identifier used across views.
GenomeGCF_003479275Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:3.41e-24:229:77:77- Raw architecture: Response_reg:6:1.79e-34:115:111:111#Trans_reg_C:153:3.41e-24:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479275::NZ_QUGF01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120997-123652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX68_00605RefSeq proteinWP_022360489.1
Context group ID
GCF_003479275::NZ_QUGF01000001.1::G00003Context members
DWX68_RS00605DWX68_RS00610
Partner locus tags
DWX68_RS00605DWX68_RS00610
Partner old locus tags
DWX68_00605DWX68_00610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022360489.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X0U0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X0U0_9CLOTDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX68_RS00605Primary locus identifier stored in the genes table.
Old locus tagDWX68_00605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGF01000001.1Sequence record reported by the local genomic context database.
Genomic interval120 997-121 698 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 997-123 652 ntGCF_003479275::NZ_QUGF01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479275::NZ_QUGF01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span120 997-123 652 nt2 656 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 997 nt123 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX68_RS00605GCF_003479275#DWX68_RS00605
RROmpRCurrent focus
120 997-121 698 nt · Reverse (-)
DWX68_RS00610GCF_003479275#DWX68_RS00610
HKClassic
121 691-123 652 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS11645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082662
Simplified PFAM architecture for RROC_1082662
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1082662
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS11645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 002 · GCF_003479275
AssemblyASM347927v1 · Scaffoldhaploid
Genome composition3 148 106 bp · 48,0% GCClostridium sp. AF20-7
Signal transduction countsGenes 62 · HK 34 · RR 26CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key