1 Response_reg#1
4-116 aa · 113 aa · 21.0% of protein
Raw token
Response_reg:4:1.89e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS09665
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS09665Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 538 aa (28.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.00000125:483:42:42- Raw architecture: Response_reg:4:1.89e-26:116:113:111#HTH_AraC:442:0.00000125:483:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000006.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119316-122716Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_09665RefSeq proteinWP_118625007.1
Context group ID
GCF_003478985::NZ_QUGH01000006.1::G00059Context members
DWX61_RS09660DWX61_RS09665
Partner locus tags
DWX61_RS09660DWX61_RS09665
Partner old locus tags
DWX61_09660DWX61_09665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118625007.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS09665Primary locus identifier stored in the genes table.
Old locus tagDWX61_09665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000006.1Sequence record reported by the local genomic context database.
Genomic interval121 100-122 716 nt1 617 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 316-122 716 ntGCF_003478985::NZ_QUGH01000006.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000006.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000006.1All displayed genes belong to this local TCS context.
Neighborhood span119 316-122 716 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 316 nt122 716 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS09660GCF_003478985#DWX61_RS09660
HKClassic
119 316-121 103 nt · Reverse (-)
DWX61_RS09665GCF_003478985#DWX61_RS09665
RRunclassifiedCurrent focus
121 100-122 716 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS09665The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0094570
Simplified PFAM architecture for RROC_0094570
PFAM domain coverage: 325 / 538 aa (60.4%)
1 aa538 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[167-300] | HTH_18[457-534]
- Domain count: 3
- Matched identifier: RROC_0094570
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 167-300 ; GGDEF_2 167-300 ; HTH_18 457-534 ; HTH_18 457-534
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS09665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key