1 Response_reg#1
4-115 aa · 112 aa · 21.1% of protein
Raw token
Response_reg:4:2.61e-27:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS01850
Response regulator, unclassified
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS01850Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 532 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-479 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:438:0.00000000124:479:42:423 HTH_AraC#3
492-528 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:492:0.0000000000421:528:37:42- Raw architecture: Response_reg:4:2.61e-27:115:112:111#HTH_AraC:438:0.00000000124:479:42:42#HTH_AraC:492:0.0000000000421:528:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span413491-416575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_01850RefSeq proteinWP_118623493.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00006Context members
DWX61_RS01845DWX61_RS01850
Partner locus tags
DWX61_RS01845DWX61_RS01850
Partner old locus tags
DWX61_01845DWX61_01850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118623493.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS01850Primary locus identifier stored in the genes table.
Old locus tagDWX61_01850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval414 977-416 575 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span413 491-416 575 ntGCF_003478985::NZ_QUGH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span413 491-416 575 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
413 491 nt416 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS01845GCF_003478985#DWX61_RS01845
HKClassic
413 491-414 999 nt · Forward (+)
DWX61_RS01850GCF_003478985#DWX61_RS01850
RRunclassifiedCurrent focus
414 977-416 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS01850The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108281
Simplified PFAM architecture for RROC_0108281
PFAM domain coverage: 190 / 532 aa (35.7%)
1 aa532 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[452-530]
- Domain count: 2
- Matched identifier: RROC_0108281
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 452-530 ; HTH_18 452-530
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS01850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key