1 Response_reg#1
9-82 aa · 74 aa · 83.1% of protein
Raw token
Response_reg:9:2.23e-19:82:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS00195
Response regulator, CheY family
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeCheYLength89 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003478985#DWX61_RS00195Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length89 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 89 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa89 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:2.23e-19:82:74:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003478985::NZ_QUGH01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span43194-43463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_00195RefSeq proteinWP_118512726.1
Context group ID
GCF_003478985::NZ_QUGH01000001.1::G00002Context members
DWX61_RS00195
Partner locus tags
DWX61_RS00195
Partner old locus tags
DWX61_00195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118512726.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS00195Primary locus identifier stored in the genes table.
Old locus tagDWX61_00195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000001.1Sequence record reported by the local genomic context database.
Genomic interval43 194-43 463 nt270 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 194-43 463 ntGCF_003478985::NZ_QUGH01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span43 194-43 463 nt270 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 194 nt43 463 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX61_RS00195GCF_003478985#DWX61_RS00195
RRCheYCurrent focus
43 194-43 463 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS00195The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2474234
Simplified PFAM architecture for RROC_2474234
PFAM domain coverage: 76 / 89 aa (85.4%)
1 aa89 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[8-83]
- Domain count: 1
- Matched identifier: RROC_2474234
- Positioned domains: Response_reg 8-83 ; Response_reg 8-83
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS00195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key