1 HAMP#1
94-161 aa · 68 aa · 17.3% of protein
Raw token
HAMP:94:0.00000000468:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS07880
Histidine kinase, Classic
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS07880Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 392 aa (60.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
179-241 aa · 63 aa · 16.1% of protein
Raw token
HisKA:179:0.00000144:241:63:643 HATPase_c#3
287-392 aa · 106 aa · 27.0% of protein
Raw token
HATPase_c:287:2.75e-20:392:108:109- Raw architecture: HAMP:94:0.00000000468:161:68:69#HisKA:179:0.00000144:241:63:64#HATPase_c:287:2.75e-20:392:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000005.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41424-43264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_07880RefSeq proteinWP_118624652.1
Context group ID
GCF_003478985::NZ_QUGH01000005.1::G00051Context members
DWX61_RS07875DWX61_RS07880
Partner locus tags
DWX61_RS07875DWX61_RS07880
Partner old locus tags
DWX61_07875DWX61_07880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118624652.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS07880Primary locus identifier stored in the genes table.
Old locus tagDWX61_07880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000005.1Sequence record reported by the local genomic context database.
Genomic interval42 086-43 264 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 424-43 264 ntGCF_003478985::NZ_QUGH01000005.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000005.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000005.1All displayed genes belong to this local TCS context.
Neighborhood span41 424-43 264 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 424 nt43 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS07875GCF_003478985#DWX61_RS07875
RROmpR
41 424-42 098 nt · Forward (+)
DWX61_RS07880GCF_003478985#DWX61_RS07880
HKClassicCurrent focus
42 086-43 264 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS07880The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2512844
Simplified PFAM architecture for HKOC_2512844
PFAM domain coverage: 214 / 392 aa (54.6%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-160] | HisKA[179-241] | HATPase_c[287-390]
- Domain count: 3
- Matched identifier: HKOC_2512844
- Positioned domains: HAMP 114-160 ; HisKA 179-241 ; HATPase_c 287-390
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS07880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key