1 HAMP#1
153-222 aa · 70 aa · 15.3% of protein
Raw token
HAMP:153:0.0000186:222:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS07360
Histidine kinase, Classic
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS07360Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 458 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000135:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:2.87e-17:451:106:109- Raw architecture: HAMP:153:0.0000186:222:70:69#HisKA:233:0.0000000000135:294:62:64#HATPase_c:346:2.87e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span269735-271761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_07360RefSeq proteinWP_118513277.1
Context group ID
GCF_003478985::NZ_QUGH01000004.1::G00045Context members
DWX61_RS07355DWX61_RS07360
Partner locus tags
DWX61_RS07355DWX61_RS07360
Partner old locus tags
DWX61_07355DWX61_07360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118513277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS07360Primary locus identifier stored in the genes table.
Old locus tagDWX61_07360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000004.1Sequence record reported by the local genomic context database.
Genomic interval270 385-271 761 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span269 735-271 761 ntGCF_003478985::NZ_QUGH01000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span269 735-271 761 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
269 735 nt271 761 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS07355GCF_003478985#DWX61_RS07355
RROmpR
269 735-270 397 nt · Forward (+)
DWX61_RS07360GCF_003478985#DWX61_RS07360
HKClassicCurrent focus
270 385-271 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS07360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1862550
Simplified PFAM architecture for HKOC_1862550
PFAM domain coverage: 167 / 458 aa (36.5%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[346-451]
- Domain count: 2
- Matched identifier: HKOC_1862550
- Positioned domains: HisKA 234-294 ; HATPase_c 346-451
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS07360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key