1 Response_reg#1
4-112 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:4:3.77e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX61_RS07355
Response regulator OmpR family
Ruminococcus sp. AF20-12LB · GCF_003478985
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478985#DWX61_RS07355Stable P2CS identifier used across views.
GenomeGCF_003478985Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:1.23e-25:218:77:77- Raw architecture: Response_reg:4:3.77e-34:112:111:111#Trans_reg_C:144:1.23e-25:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478985::NZ_QUGH01000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span269735-271761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX61_07355RefSeq proteinWP_118513278.1
Context group ID
GCF_003478985::NZ_QUGH01000004.1::G00045Context members
DWX61_RS07355DWX61_RS07360
Partner locus tags
DWX61_RS07355DWX61_RS07360
Partner old locus tags
DWX61_07355DWX61_07360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118513278.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX61_RS07355Primary locus identifier stored in the genes table.
Old locus tagDWX61_07355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGH01000004.1Sequence record reported by the local genomic context database.
Genomic interval269 735-270 397 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span269 735-271 761 ntGCF_003478985::NZ_QUGH01000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478985::NZ_QUGH01000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span269 735-271 761 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
269 735 nt271 761 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX61_RS07355GCF_003478985#DWX61_RS07355
RROmpRCurrent focus
269 735-270 397 nt · Forward (+)
DWX61_RS07360GCF_003478985#DWX61_RS07360
HKClassic
270 385-271 761 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478985#DWX61_RS07355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732506
Simplified PFAM architecture for RROC_1732506
PFAM domain coverage: 182 / 220 aa (82.7%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1732506
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_003478985#DWX61_RS07355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 160 · GCF_003478985
AssemblyASM347898v1 · Scaffoldhaploid
Genome composition3 953 478 bp · 43,5% GCRuminococcus sp. AF20-12LB
Signal transduction countsGenes 107 · HK 50 · RR 55CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key