1 Response_reg#1
5-122 aa · 118 aa · 49.2% of protein
Raw token
Response_reg:5:4.38e-16:122:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS02870
Response regulator LytTR family
Dorea sp. AM13-35 · GCF_003473885
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473885#DW152_RS02870Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 240 aa (86.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
143-232 aa · 90 aa · 37.5% of protein
Raw token
LytTR:143:0.00000000000955:232:95:98- Raw architecture: Response_reg:5:4.38e-16:122:121:111#LytTR:143:0.00000000000955:232:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473885::NZ_QUCZ01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span591505-592227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_02870RefSeq proteinWP_158570015.1
Context group ID
GCF_003473885::NZ_QUCZ01000001.1::G00004Context members
DW152_RS02870
Partner locus tags
DW152_RS02870
Partner old locus tags
DW152_02870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158570015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS02870Primary locus identifier stored in the genes table.
Old locus tagDW152_02870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval591 505-592 227 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span591 505-592 227 ntGCF_003473885::NZ_QUCZ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span591 505-592 227 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
591 505 nt592 227 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW152_RS02870GCF_003473885#DW152_RS02870
RRLytTRCurrent focus
591 505-592 227 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS02870The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888356
Simplified PFAM architecture for RROC_0888356
PFAM domain coverage: 200 / 240 aa (83.3%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-118] | LytTR[147-232]
- Domain count: 2
- Matched identifier: RROC_0888356
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; LytTR 147-232 ; LytTR 147-232
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS02870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key