1 HisKA#1
485-550 aa · 66 aa · 9.3% of protein
Raw token
HisKA:485:7.42e-17:550:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS01725
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength706 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS01725Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length706 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 706 aa (23.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
602-703 aa · 102 aa · 14.4% of protein
Raw token
HATPase_c:602:0.00000000000101:703:107:109- Raw architecture: HisKA:485:7.42e-17:550:66:64#HATPase_c:602:0.00000000000101:703:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span356972-359771Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_01725RefSeq proteinWP_118287832.1
Context group ID
GCF_003473885::NZ_QUCZ01000001.1::G00003Context members
DW152_RS01720DW152_RS01725
Partner locus tags
DW152_RS01720DW152_RS01725
Partner old locus tags
DW152_01720DW152_01725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118287832.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS01725Primary locus identifier stored in the genes table.
Old locus tagDW152_01725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval357 651-359 771 nt2 121 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span356 972-359 771 ntGCF_003473885::NZ_QUCZ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span356 972-359 771 nt2 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
356 972 nt359 771 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS01720GCF_003473885#DW152_RS01720
RROmpR
356 972-357 679 nt · Forward (+)
DW152_RS01725GCF_003473885#DW152_RS01725
HKClassicCurrent focus
357 651-359 771 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS01725The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0757820
Simplified PFAM architecture for HKOC_0757820
PFAM domain coverage: 172 / 706 aa (24.4%)
1 aa706 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[485-549] | HATPase_c[597-703]
- Domain count: 2
- Matched identifier: HKOC_0757820
- Positioned domains: HisKA 485-549 ; HATPase_c 597-703
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS01725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key