1 sCache_like#1
37-129 aa · 93 aa · 20.9% of protein
Raw token
sCache_like:37:0.0000000196:129:93:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS03430
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS03430Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 446 aa (60.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
220-286 aa · 67 aa · 15.0% of protein
Raw token
HisKA:220:1.31e-18:286:67:643 HATPase_c#3
330-438 aa · 109 aa · 24.4% of protein
Raw token
HATPase_c:330:8.79e-27:438:109:109- Raw architecture: sCache_like:37:0.0000000196:129:93:114#HisKA:220:1.31e-18:286:67:64#HATPase_c:330:8.79e-27:438:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100758-102787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_03430RefSeq proteinWP_021861195.1
Context group ID
GCF_003473885::NZ_QUCZ01000002.1::G00009Context members
DW152_RS03430DW152_RS03435
Partner locus tags
DW152_RS03430DW152_RS03435
Partner old locus tags
DW152_03430DW152_03435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021861195.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS03430Primary locus identifier stored in the genes table.
Old locus tagDW152_03430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval100 758-102 098 nt1 341 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span100 758-102 787 ntGCF_003473885::NZ_QUCZ01000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span100 758-102 787 nt2 030 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 758 nt102 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS03430GCF_003473885#DW152_RS03430
HKClassicCurrent focus
100 758-102 098 nt · Reverse (-)
DW152_RS03435GCF_003473885#DW152_RS03435
RROmpR
102 113-102 787 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS01595Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2013376
Simplified PFAM architecture for HKOC_2013376
PFAM domain coverage: 269 / 446 aa (60.3%)
1 aa446 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[39-133] | HisKA[220-286] | HATPase_c[333-439]
- Domain count: 3
- Matched identifier: HKOC_2013376
- Positioned domains: sCache_like 39-133 ; HisKA 220-286 ; HATPase_c 333-439
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS01595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key