1 HisKA#1
325-391 aa · 67 aa · 9.4% of protein
Raw token
HisKA:325:4.2e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS07040
Histidine kinase, Hybrid
Blautia obeum · GCF_003469845
ClassHKTypeHybridLength713 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS07040Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 713 aa (42.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.7% of protein
Raw token
HATPase_c:438:5.24e-29:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.4% of protein
Raw token
Response_reg:584:2.37e-26:700:117:111- Raw architecture: HisKA:325:4.2e-17:391:67:64#HATPase_c:438:5.24e-29:556:119:109#Response_reg:584:2.37e-26:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000004.1::G00040
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span278859-283934Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_07065RefSeq proteinWP_118049431.1
Context group ID
GCF_003469845::NZ_QSKF01000004.1::G00040Context members
DW740_RS07040DW740_RS07045
Partner locus tags
DW740_RS07040DW740_RS07045
Partner old locus tags
DW740_07065DW740_07070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118049431.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J8A2Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J8A2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS07040Primary locus identifier stored in the genes table.
Old locus tagDW740_07065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000004.1Sequence record reported by the local genomic context database.
Genomic interval278 859-281 000 nt2 142 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span278 859-283 934 ntGCF_003469845::NZ_QSKF01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000004.1All displayed genes belong to this local TCS context.
Neighborhood span278 859-283 934 nt5 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
278 859 nt283 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS07040GCF_003469845#DW740_RS07040
HKHybridCurrent focus
278 859-281 000 nt · Forward (+)
DW740_RS07045GCF_003469845#DW740_RS07045
HKHybrid
281 106-283 934 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS03735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0743823
Simplified PFAM architecture for HKOC_0743823
PFAM domain coverage: 301 / 714 aa (42.2%)
1 aa714 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[438-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0743823
- Positioned domains: HisKA 325-391 ; HATPase_c 438-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS03735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key