1 HisKA#1
114-180 aa · 67 aa · 13.7% of protein
Raw token
HisKA:114:5.9e-17:180:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS03715
Histidine kinase, Hybrid
Blautia obeum · GCF_003469845
ClassHKTypeHybridLength489 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003469845#DW740_RS03715Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 489 aa (60.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
226-341 aa · 116 aa · 23.7% of protein
Raw token
HATPase_c:226:2.42e-27:341:116:1093 Response_reg#3
369-482 aa · 114 aa · 23.3% of protein
Raw token
Response_reg:369:5.12e-28:482:114:111- Raw architecture: HisKA:114:5.9e-17:180:67:64#HATPase_c:226:2.42e-27:341:116:109#Response_reg:369:5.12e-28:482:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003469845::NZ_QSKF01000002.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span238950-240419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_03740RefSeq proteinWP_243037300.1
Context group ID
GCF_003469845::NZ_QSKF01000002.1::G00021Context members
DW740_RS03715
Partner locus tags
DW740_RS03715
Partner old locus tags
DW740_03740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243037300.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS03715Primary locus identifier stored in the genes table.
Old locus tagDW740_03740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000002.1Sequence record reported by the local genomic context database.
Genomic interval238 950-240 419 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span238 950-240 419 ntGCF_003469845::NZ_QSKF01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span238 950-240 419 nt1 470 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 950 nt240 419 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW740_RS03715GCF_003469845#DW740_RS03715
HKHybridCurrent focus
238 950-240 419 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027663885#PGR46_RS06980Use this link to inspect the representative gene detail.
PFAM architectureSnoaL_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0841175
Simplified PFAM architecture for HKOC_0841175
PFAM domain coverage: 417 / 672 aa (62.1%)
1 aa672 aa
SnoaL_3HisKAHATPase_cResponse_reg
- Simplified architecture: SnoaL_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SnoaL_3[10-130] | HisKA[297-362] | HATPase_c[410-525] | Response_reg[552-665]
- Domain count: 4
- Matched identifier: HKOC_0841175
- Positioned domains: SnoaL_3 10-130 ; HisKA 297-362 ; HATPase_c 410-525 ; Response_reg 552-665
Cluster members and taxonomy
Representative gene: GCF_027663885#PGR46_RS06980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key