1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:1.5e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS03050
Response regulator OmpR family
Blautia obeum · GCF_003469845
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003469845#DW740_RS03050Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:151:2.55e-29:226:76:77- Raw architecture: Response_reg:4:1.5e-34:113:111:111#Trans_reg_C:151:2.55e-29:226:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003469845::NZ_QSKF01000002.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113130-116486Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_03075RefSeq proteinWP_015540685.1
Context group ID
GCF_003469845::NZ_QSKF01000002.1::G00020Context members
DW740_RS03050DW740_RS03055
Partner locus tags
DW740_RS03050DW740_RS03055
Partner old locus tags
DW740_03075DW740_03080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015540685.1Primary protein accession used for annex mappings.
UniProt accessionA0A414EJ65Primary UniProt accession resolved in the annex database.
UniProt IDA0A414EJ65_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS03050Primary locus identifier stored in the genes table.
Old locus tagDW740_03075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000002.1Sequence record reported by the local genomic context database.
Genomic interval113 130-113 822 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 130-116 486 ntGCF_003469845::NZ_QSKF01000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span113 130-116 486 nt3 357 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 130 nt116 486 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW740_RS03050GCF_003469845#DW740_RS03050
RROmpRCurrent focus
113 130-113 822 nt · Forward (+)
DW740_RS03055GCF_003469845#DW740_RS03055
HKClassic
113 910-116 486 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210015#CK5_RS00500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200587
Simplified PFAM architecture for RROC_1200587
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1200587
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000210015#CK5_RS00500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key