1 CHASE#1
109-193 aa · 85 aa · 12.4% of protein
Raw token
CHASE:109:0.0000000000000117:193:94:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW740_RS04845
Histidine kinase, Hybrid
Blautia obeum · GCF_003469845
ClassHKTypeHybridLength684 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003469845#DW740_RS04845Stable P2CS identifier used across views.
GenomeGCF_003469845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length684 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage384 / 684 aa (56.1%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa684 aa
Domain-by-domain annotation4 items
2 HisKA#2
307-373 aa · 67 aa · 9.8% of protein
Raw token
HisKA:307:1.78e-16:373:67:643 HATPase_c#3
419-536 aa · 118 aa · 17.3% of protein
Raw token
HATPase_c:419:3.4e-30:536:118:1094 Response_reg#4
563-676 aa · 114 aa · 16.7% of protein
Raw token
Response_reg:563:2.62e-29:676:114:111- Raw architecture: CHASE:109:0.0000000000000117:193:94:183#HisKA:307:1.78e-16:373:67:64#HATPase_c:419:3.4e-30:536:118:109#Response_reg:563:2.62e-29:676:114:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003469845::NZ_QSKF01000003.1::G00028
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span129659-136987Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW740_04870RefSeq proteinWP_118048540.1
Context group ID
GCF_003469845::NZ_QSKF01000003.1::G00028Context members
DW740_RS04840DW740_RS04845DW740_RS04850
Partner locus tags
DW740_RS04840DW740_RS04845DW740_RS04850
Partner old locus tags
DW740_04865DW740_04870DW740_04875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118048540.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J8P6Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J8P6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW740_RS04845Primary locus identifier stored in the genes table.
Old locus tagDW740_04870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSKF01000003.1Sequence record reported by the local genomic context database.
Genomic interval131 665-133 719 nt2 055 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span129 659-136 987 ntGCF_003469845::NZ_QSKF01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003469845::NZ_QSKF01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSKF01000003.1All displayed genes belong to this local TCS context.
Neighborhood span129 659-136 987 nt7 329 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 659 nt136 987 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW740_RS04840GCF_003469845#DW740_RS04840
HKHybrid
129 659-131 668 nt · Reverse (-)
DW740_RS04845GCF_003469845#DW740_RS04845
HKHybridCurrent focus
131 665-133 719 nt · Reverse (-)
DW740_RS04850GCF_003469845#DW740_RS04850
HKHybrid
133 841-136 987 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS00250Use this link to inspect the representative gene detail.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0806260
Simplified PFAM architecture for HKOC_0806260
PFAM domain coverage: 409 / 684 aa (59.8%)
1 aa684 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[108-216] | HisKA[307-373] | HATPase_c[419-536] | Response_reg[563-677]
- Domain count: 4
- Matched identifier: HKOC_0806260
- Positioned domains: CHASE 108-216 ; HisKA 307-373 ; HATPase_c 419-536 ; Response_reg 563-677
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS00250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003469845
AssemblyASM346984v1 · Scaffoldhaploid
Genome composition3 617 583 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 87 · HK 44 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key