1 CHASE#1
109-193 aa · 85 aa · 12.4% of protein
Raw token
CHASE:109:0.0000000000000117:193:94:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW934_RS00250
Histidine kinase, Hybrid
Blautia obeum · GCF_003466965
ClassHKTypeHybridLength684 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003466965#DW934_RS00250Stable P2CS identifier used across views.
GenomeGCF_003466965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length684 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage384 / 684 aa (56.1%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa684 aa
Domain-by-domain annotation4 items
2 HisKA#2
307-373 aa · 67 aa · 9.8% of protein
Raw token
HisKA:307:1.78e-16:373:67:643 HATPase_c#3
419-536 aa · 118 aa · 17.3% of protein
Raw token
HATPase_c:419:3.4e-30:536:118:1094 Response_reg#4
563-676 aa · 114 aa · 16.7% of protein
Raw token
Response_reg:563:2.62e-29:676:114:111- Raw architecture: CHASE:109:0.0000000000000117:193:94:183#HisKA:307:1.78e-16:373:67:64#HATPase_c:419:3.4e-30:536:118:109#Response_reg:563:2.62e-29:676:114:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003466965::NZ_QSFL01000001.1::G00003
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span54566-61816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW934_00250RefSeq proteinWP_118048540.1
Context group ID
GCF_003466965::NZ_QSFL01000001.1::G00003Context members
DW934_RS00245DW934_RS00250DW934_RS00255
Partner locus tags
DW934_RS00245DW934_RS00250DW934_RS00255
Partner old locus tags
DW934_00245DW934_00250DW934_00255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118048540.1Primary protein accession used for annex mappings.
UniProt accessionA0A414J8P6Primary UniProt accession resolved in the annex database.
UniProt IDA0A414J8P6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW934_RS00250Primary locus identifier stored in the genes table.
Old locus tagDW934_00250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSFL01000001.1Sequence record reported by the local genomic context database.
Genomic interval57 756-59 810 nt2 055 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 566-61 816 ntGCF_003466965::NZ_QSFL01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003466965::NZ_QSFL01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSFL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span54 566-61 816 nt7 251 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 566 nt61 816 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW934_RS00245GCF_003466965#DW934_RS00245
HKHybrid
54 566-57 634 nt · Forward (+)
DW934_RS00250GCF_003466965#DW934_RS00250
HKHybridCurrent focus
57 756-59 810 nt · Forward (+)
DW934_RS00255GCF_003466965#DW934_RS00255
HKHybrid
59 840-61 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS00250The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0806260
Simplified PFAM architecture for HKOC_0806260
PFAM domain coverage: 409 / 684 aa (59.8%)
1 aa684 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[108-216] | HisKA[307-373] | HATPase_c[419-536] | Response_reg[563-677]
- Domain count: 4
- Matched identifier: HKOC_0806260
- Positioned domains: CHASE 108-216 ; HisKA 307-373 ; HATPase_c 419-536 ; Response_reg 563-677
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS00250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003466965
AssemblyASM346696v1 · Scaffoldhaploid
Genome composition3 690 080 bp · 42,5% GCBlautia obeum
Signal transduction countsGenes 95 · HK 49 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key