1 Response_reg#1
95-203 aa · 109 aa · 34.2% of protein
Raw token
Response_reg:95:8.18e-34:203:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS19775
Response regulator OmpR family
[Clostridium] symbiosum · GCF_003463485
ClassRRTypeOmpRLength319 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS19775Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length319 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 319 aa (57.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa319 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
242-315 aa · 74 aa · 23.2% of protein
Raw token
Trans_reg_C:242:2.16e-28:315:75:77- Raw architecture: Response_reg:95:8.18e-34:203:111:111#Trans_reg_C:242:2.16e-28:315:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000080.1::G00066
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3682-4641Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_19770RefSeq proteinWP_330426074.1
Context group ID
GCF_003463485::NZ_QSDB01000080.1::G00066Context members
DXA34_RS19775
Partner locus tags
DXA34_RS19775
Partner old locus tags
DXA34_19770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330426074.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS19775Primary locus identifier stored in the genes table.
Old locus tagDXA34_19770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000080.1Sequence record reported by the local genomic context database.
Genomic interval3 682-4 641 nt960 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 682-4 641 ntGCF_003463485::NZ_QSDB01000080.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000080.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000080.1All displayed genes belong to this local TCS context.
Neighborhood span3 682-4 641 nt960 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 682 nt4 641 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS19775GCF_003463485#DXA34_RS19775
RROmpRCurrent focus
3 682-4 641 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003463485#DXA34_RS19775The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0534109
Simplified PFAM architecture for RROC_0534109
PFAM domain coverage: 183 / 319 aa (57.4%)
1 aa319 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[95-202] | Trans_reg_C[242-316]
- Domain count: 2
- Matched identifier: RROC_0534109
- Positioned domains: Response_reg 95-202 ; Response_reg 95-202 ; Trans_reg_C 242-316 ; Trans_reg_C 242-316
Cluster members and taxonomy
Representative gene: GCF_003463485#DXA34_RS19775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key