1 Response_reg#1
7-120 aa · 114 aa · 16.4% of protein
Raw token
Response_reg:7:3.89e-27:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA34_RS00415
Response regulator, PleD family
[Clostridium] symbiosum · GCF_003463485
ClassRRTypePleDLength694 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003463485#DXA34_RS00415Stable P2CS identifier used across views.
GenomeGCF_003463485Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regPAS_3GGDEF
Protein length694 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage417 / 694 aa (60.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 PAS_3,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa694 aa
Domain-by-domain annotation4 items
2 PAS_3#2
163-253 aa · 91 aa · 13.1% of protein
Raw token
PAS_3:163:0.000000000000148:253:91:893 PAS_3#3
320-381 aa · 62 aa · 8.9% of protein
Raw token
PAS_3:320:0.000000118:381:63:894 GGDEF#4
534-683 aa · 150 aa · 21.6% of protein
Raw token
GGDEF:534:1e-39:683:156:160- Raw architecture: Response_reg:7:3.89e-27:120:115:111#PAS_3:163:0.000000000000148:253:91:89#PAS_3:320:0.000000118:381:63:89#GGDEF:534:1e-39:683:156:160
- Domain description: 1 Response_reg,2 PAS_3,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003463485::NZ_QSDB01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span91750-93834Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA34_00415RefSeq proteinWP_055176330.1
Context group ID
GCF_003463485::NZ_QSDB01000001.1::G00001Context members
DXA34_RS00415
Partner locus tags
DXA34_RS00415
Partner old locus tags
DXA34_00415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055176330.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA34_RS00415Primary locus identifier stored in the genes table.
Old locus tagDXA34_00415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSDB01000001.1Sequence record reported by the local genomic context database.
Genomic interval91 750-93 834 nt2 085 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 750-93 834 ntGCF_003463485::NZ_QSDB01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003463485::NZ_QSDB01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSDB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span91 750-93 834 nt2 085 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 750 nt93 834 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXA34_RS00415GCF_003463485#DXA34_RS00415
RRPleDCurrent focus
91 750-93 834 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS08480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + PAS_3 + PAS_9 + GGDEF4 domains in the representative PFAM annotation.
PFAM architecture for RROC_0030879
Simplified PFAM architecture for RROC_0030879
PFAM domain coverage: 403 / 694 aa (58.1%)
1 aa694 aa
Response_regPAS_3PAS_9GGDEF
- Simplified architecture: Response_reg + PAS_3 + PAS_9 + GGDEF
- Raw architecture: Response_reg[7-113] | PAS_3[164-245] | PAS_9[324-387] | GGDEF[534-683]
- Domain count: 4
- Matched identifier: RROC_0030879
- Positioned domains: Response_reg 7-113 ; Response_reg 7-113 ; PAS_3 164-245 ; PAS_3 164-245 ; PAS_9 324-387 ; PAS_9 324-387 ; GGDEF 534-683 ; GGDEF 534-683
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS08480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_003463485
AssemblyASM346348v1 · Scaffoldhaploid
Genome composition5 075 475 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 113 · HK 55 · RR 52CheA 1 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key