1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:2.76e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS07140
Response regulator OmpR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS07140Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:151:1.6e-35:225:75:77- Raw architecture: Response_reg:5:2.76e-40:114:111:111#Trans_reg_C:151:1.6e-35:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000005.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145897-148065Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_07140RefSeq proteinWP_022046414.1
Context group ID
GCF_003462365::NZ_QTYW01000005.1::G00051Context members
DXD06_RS07135DXD06_RS07140
Partner locus tags
DXD06_RS07135DXD06_RS07140
Partner old locus tags
DXD06_07135DXD06_07140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046414.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WWM5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WWM5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS07140Primary locus identifier stored in the genes table.
Old locus tagDXD06_07140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000005.1Sequence record reported by the local genomic context database.
Genomic interval147 373-148 065 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span145 897-148 065 ntGCF_003462365::NZ_QTYW01000005.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000005.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span145 897-148 065 nt2 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 897 nt148 065 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS07135GCF_003462365#DXD06_RS07135
HKClassic
145 897-147 348 nt · Reverse (-)
DXD06_RS07140GCF_003462365#DXD06_RS07140
RROmpRCurrent focus
147 373-148 065 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS06320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1205236
Simplified PFAM architecture for RROC_1205236
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1205236
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS06320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key