1 Response_reg#1
4-107 aa · 104 aa · 43.2% of protein
Raw token
Response_reg:4:0.00000000000000291:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS06525
Response regulator LytTR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462365#DXD06_RS06525Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 241 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-234 aa · 90 aa · 37.3% of protein
Raw token
LytTR:145:0.0000000000000923:234:95:98- Raw architecture: Response_reg:4:0.00000000000000291:107:106:111#LytTR:145:0.0000000000000923:234:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462365::NZ_QTYW01000005.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13489-14214Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_06525RefSeq proteinWP_117831105.1
Context group ID
GCF_003462365::NZ_QTYW01000005.1::G00050Context members
DXD06_RS06525
Partner locus tags
DXD06_RS06525
Partner old locus tags
DXD06_06525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117831105.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS06525Primary locus identifier stored in the genes table.
Old locus tagDXD06_06525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000005.1Sequence record reported by the local genomic context database.
Genomic interval13 489-14 214 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 489-14 214 ntGCF_003462365::NZ_QTYW01000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span13 489-14 214 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 489 nt14 214 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD06_RS06525GCF_003462365#DXD06_RS06525
RRLytTRCurrent focus
13 489-14 214 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS06525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0867741
Simplified PFAM architecture for RROC_0867741
PFAM domain coverage: 194 / 241 aa (80.5%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-107] | LytTR[145-234]
- Domain count: 2
- Matched identifier: RROC_0867741
- Positioned domains: Response_reg 4-107 ; Response_reg 4-107 ; LytTR 145-234 ; LytTR 145-234
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS06525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key