1 Response_reg#1
4-124 aa · 121 aa · 22.6% of protein
Raw token
Response_reg:4:2.32e-31:124:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS05645
Response regulator, unclassified
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeunclassifiedLength536 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003462365#DXD06_RS05645Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage200 / 536 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.0000232:483:42:423 HTH_AraC#3
497-533 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:497:0.000000386:533:37:42- Raw architecture: Response_reg:4:2.32e-31:124:121:111#HTH_AraC:442:0.0000232:483:42:42#HTH_AraC:497:0.000000386:533:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003462365::NZ_QTYW01000004.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87618-89228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_05650RefSeq proteinWP_117830968.1
Context group ID
GCF_003462365::NZ_QTYW01000004.1::G00047Context members
DXD06_RS05645
Partner locus tags
DXD06_RS05645
Partner old locus tags
DXD06_05650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117830968.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS05645Primary locus identifier stored in the genes table.
Old locus tagDXD06_05650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000004.1Sequence record reported by the local genomic context database.
Genomic interval87 618-89 228 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 618-89 228 ntGCF_003462365::NZ_QTYW01000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span87 618-89 228 nt1 611 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 618 nt89 228 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXD06_RS05645GCF_003462365#DXD06_RS05645
RRunclassifiedCurrent focus
87 618-89 228 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS05645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0098854
Simplified PFAM architecture for RROC_0098854
PFAM domain coverage: 190 / 536 aa (35.4%)
1 aa536 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[458-534]
- Domain count: 2
- Matched identifier: RROC_0098854
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 458-534 ; HTH_18 458-534
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS05645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key