1 Response_reg#1
12-120 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:12:1.12e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS04280
Response regulator OmpR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS04280Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 233 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.8% of protein
Raw token
Trans_reg_C:156:2.32e-28:229:74:77- Raw architecture: Response_reg:12:1.12e-29:120:110:111#Trans_reg_C:156:2.32e-28:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span109082-111152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_04285RefSeq proteinWP_015515120.1
Context group ID
GCF_003462365::NZ_QTYW01000003.1::G00037Context members
DXD06_RS04275DXD06_RS04280
Partner locus tags
DXD06_RS04275DXD06_RS04280
Partner old locus tags
DXD06_04280DXD06_04285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015515120.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TQF7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TQF7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS04280Primary locus identifier stored in the genes table.
Old locus tagDXD06_04285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000003.1Sequence record reported by the local genomic context database.
Genomic interval110 451-111 152 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 082-111 152 ntGCF_003462365::NZ_QTYW01000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span109 082-111 152 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 082 nt111 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS04275GCF_003462365#DXD06_RS04275
HKClassic
109 082-110 446 nt · Reverse (-)
DXD06_RS04280GCF_003462365#DXD06_RS04280
RROmpRCurrent focus
110 451-111 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS14500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081178
Simplified PFAM architecture for RROC_1081178
PFAM domain coverage: 183 / 233 aa (78.5%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-229]
- Domain count: 2
- Matched identifier: RROC_1081178
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-229 ; Trans_reg_C 156-229
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS14500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key