1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.00000437:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS04245
Histidine kinase, Classic
Roseburia sp. TF10-5 · GCF_003462365
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS04245Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 343 aa (50.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-340 aa · 106 aa · 30.9% of protein
Raw token
HATPase_c:235:4.22e-27:340:106:109- Raw architecture: HisKA:124:0.00000437:189:66:64#HATPase_c:235:4.22e-27:340:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000003.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103023-104734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_04250RefSeq proteinWP_117830774.1
Context group ID
GCF_003462365::NZ_QTYW01000003.1::G00036Context members
DXD06_RS04240DXD06_RS04245
Partner locus tags
DXD06_RS04240DXD06_RS04245
Partner old locus tags
DXD06_04245DXD06_04250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117830774.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS04245Primary locus identifier stored in the genes table.
Old locus tagDXD06_04250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000003.1Sequence record reported by the local genomic context database.
Genomic interval103 703-104 734 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 023-104 734 ntGCF_003462365::NZ_QTYW01000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span103 023-104 734 nt1 712 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 023 nt104 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS04240GCF_003462365#DXD06_RS04240
RROmpR
103 023-103 706 nt · Forward (+)
DXD06_RS04245GCF_003462365#DXD06_RS04245
HKClassicCurrent focus
103 703-104 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS04245The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828823
Simplified PFAM architecture for HKOC_2828823
PFAM domain coverage: 172 / 343 aa (50.1%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-340]
- Domain count: 2
- Matched identifier: HKOC_2828823
- Positioned domains: HisKA 124-189 ; HATPase_c 235-340
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS04245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key