1 Response_reg#1
3-112 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:3:3.95e-30:112:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS04165
Response regulator OmpR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS04165Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 220 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:145:6.39e-24:219:76:77- Raw architecture: Response_reg:3:3.95e-30:112:115:111#Trans_reg_C:145:6.39e-24:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000003.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91713-93388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_04170RefSeq proteinWP_117830762.1
Context group ID
GCF_003462365::NZ_QTYW01000003.1::G00034Context members
DXD06_RS04165DXD06_RS04170
Partner locus tags
DXD06_RS04165DXD06_RS04170
Partner old locus tags
DXD06_04170DXD06_04175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117830762.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS04165Primary locus identifier stored in the genes table.
Old locus tagDXD06_04170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000003.1Sequence record reported by the local genomic context database.
Genomic interval91 713-92 375 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 713-93 388 ntGCF_003462365::NZ_QTYW01000003.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000003.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000003.1All displayed genes belong to this local TCS context.
Neighborhood span91 713-93 388 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 713 nt93 388 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS04165GCF_003462365#DXD06_RS04165
RROmpRCurrent focus
91 713-92 375 nt · Forward (+)
DXD06_RS04170GCF_003462365#DXD06_RS04170
HKClassic
92 372-93 388 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS04165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1732420
Simplified PFAM architecture for RROC_1732420
PFAM domain coverage: 185 / 220 aa (84.1%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1732420
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS04165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key