1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:1.31e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXD06_RS02860
Response regulator OmpR family
Roseburia sp. TF10-5 · GCF_003462365
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003462365#DXD06_RS02860Stable P2CS identifier used across views.
GenomeGCF_003462365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.8% of protein
Raw token
Trans_reg_C:145:2.21e-22:218:76:77- Raw architecture: Response_reg:4:1.31e-34:112:111:111#Trans_reg_C:145:2.21e-22:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003462365::NZ_QTYW01000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168696-170734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXD06_02865RefSeq proteinWP_055068391.1
Context group ID
GCF_003462365::NZ_QTYW01000002.1::G00015Context members
DXD06_RS02855DXD06_RS02860
Partner locus tags
DXD06_RS02855DXD06_RS02860
Partner old locus tags
DXD06_02860DXD06_02865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068391.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WTW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WTW9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXD06_RS02860Primary locus identifier stored in the genes table.
Old locus tagDXD06_02865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTYW01000002.1Sequence record reported by the local genomic context database.
Genomic interval170 075-170 734 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 696-170 734 ntGCF_003462365::NZ_QTYW01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003462365::NZ_QTYW01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTYW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span168 696-170 734 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 696 nt170 734 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXD06_RS02855GCF_003462365#DXD06_RS02855
HKClassic
168 696-170 084 nt · Reverse (-)
DXD06_RS02860GCF_003462365#DXD06_RS02860
RROmpRCurrent focus
170 075-170 734 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS07980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1772071
Simplified PFAM architecture for RROC_1772071
PFAM domain coverage: 180 / 219 aa (82.2%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1772071
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS07980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 144 · GCF_003462365
AssemblyASM346236v1 · Scaffoldhaploid
Genome composition3 443 473 bp · 43,0% GCRoseburia sp. TF10-5
Signal transduction countsGenes 112 · HK 50 · RR 61CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key