1 Cache_3-Cache_2#1
135-279 aa · 145 aa · 23.6% of protein
Raw token
Cache_3-Cache_2:135:0.0000000488:279:151:291P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS02490
Histidine kinase, Classic
Coprococcus comes · GCF_003460315
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460315#DWX03_RS02490Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Cache_3-Cache_2HisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage332 / 615 aa (54.0%)Merged over positioned domains only.
Domain description1 Cache_3-Cache_2,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-408 aa · 62 aa · 10.1% of protein
Raw token
HisKA:347:0.0000000399:408:62:643 HATPase_c#3
454-578 aa · 125 aa · 20.3% of protein
Raw token
HATPase_c:454:2.35e-26:578:126:109- Raw architecture: Cache_3-Cache_2:135:0.0000000488:279:151:291#HisKA:347:0.0000000399:408:62:64#HATPase_c:454:2.35e-26:578:126:109
- Domain description: 1 Cache_3-Cache_2,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460315::NZ_QRXJ01000002.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span245629-247776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_02490RefSeq proteinWP_242999932.1
Context group ID
GCF_003460315::NZ_QRXJ01000002.1::G00020Context members
DWX03_RS15950DWX03_RS02490
Partner locus tags
DWX03_RS15950DWX03_RS02490
Partner old locus tags
DWX03_02490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242999932.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS02490Primary locus identifier stored in the genes table.
Old locus tagDWX03_02490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval245 929-247 776 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span245 629-247 776 ntGCF_003460315::NZ_QRXJ01000002.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000002.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span245 629-247 776 nt2 148 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
245 629 nt247 776 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX03_RS15950GCF_003460315#DWX03_RS15950
RRCheY
245 629-245 925 nt · Reverse (-)
DWX03_RS02490GCF_003460315#DWX03_RS02490
HKClassicCurrent focus
245 929-247 776 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS02490The current gene is the representative for this cluster.
PFAM architecturesCache_2 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0989296
Simplified PFAM architecture for HKOC_0989296
PFAM domain coverage: 308 / 615 aa (50.1%)
1 aa615 aa
sCache_2HisKAHATPase_c
- Simplified architecture: sCache_2 + HisKA + HATPase_c
- Raw architecture: sCache_2[160-281] | HisKA[348-409] | HATPase_c[455-578]
- Domain count: 3
- Matched identifier: HKOC_0989296
- Positioned domains: sCache_2 160-281 ; HisKA 348-409 ; HATPase_c 455-578
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS02490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key