1 HisKA#1
466-531 aa · 66 aa · 9.5% of protein
Raw token
HisKA:466:1.01e-16:531:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS00815
Histidine kinase, Classic
Coprococcus comes · GCF_003460315
ClassHKTypeClassicLength694 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003460315#DWX03_RS00815Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length694 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 694 aa (22.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa694 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
583-672 aa · 90 aa · 13.0% of protein
Raw token
HATPase_c:583:0.0000000000000304:672:94:109- Raw architecture: HisKA:466:1.01e-16:531:66:64#HATPase_c:583:0.0000000000000304:672:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003460315::NZ_QRXJ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span175129-177892Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_00815RefSeq proteinWP_117834116.1
Context group ID
GCF_003460315::NZ_QRXJ01000001.1::G00004Context members
DWX03_RS00810DWX03_RS00815
Partner locus tags
DWX03_RS00810DWX03_RS00815
Partner old locus tags
DWX03_00810DWX03_00815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117834116.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R6BJX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R6BJX3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS00815Primary locus identifier stored in the genes table.
Old locus tagDWX03_00815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval175 808-177 892 nt2 085 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span175 129-177 892 ntGCF_003460315::NZ_QRXJ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span175 129-177 892 nt2 764 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 129 nt177 892 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX03_RS00810GCF_003460315#DWX03_RS00810
RROmpR
175 129-175 836 nt · Forward (+)
DWX03_RS00815GCF_003460315#DWX03_RS00815
HKClassicCurrent focus
175 808-177 892 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS00815The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0782840
Simplified PFAM architecture for HKOC_0782840
PFAM domain coverage: 161 / 694 aa (23.2%)
1 aa694 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[466-530] | HATPase_c[578-673]
- Domain count: 2
- Matched identifier: HKOC_0782840
- Positioned domains: HisKA 466-530 ; HATPase_c 578-673
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS00815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key