1 HisKA#1
297-363 aa · 67 aa · 9.9% of protein
Raw token
HisKA:297:3.71e-17:363:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS00205
Histidine kinase, Hybrid
Coprococcus comes · GCF_003460315
ClassHKTypeHybridLength674 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003460315#DWX03_RS00205Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length674 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 674 aa (44.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa674 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
409-524 aa · 116 aa · 17.2% of protein
Raw token
HATPase_c:409:3.03e-27:524:117:1093 Response_reg#3
552-665 aa · 114 aa · 16.9% of protein
Raw token
Response_reg:552:4.3e-28:665:114:111- Raw architecture: HisKA:297:3.71e-17:363:67:64#HATPase_c:409:3.03e-27:524:117:109#Response_reg:552:4.3e-28:665:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003460315::NZ_QRXJ01000001.1::G00002
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span37530-45512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_00205RefSeq proteinWP_117834015.1
Context group ID
GCF_003460315::NZ_QRXJ01000001.1::G00002Context members
DWX03_RS00200DWX03_RS00205DWX03_RS00210
Partner locus tags
DWX03_RS00200DWX03_RS00205DWX03_RS00210
Partner old locus tags
DWX03_00200DWX03_00205DWX03_00210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117834015.1Primary protein accession used for annex mappings.
UniProt accessionA0A412QPG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A412QPG1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS00205Primary locus identifier stored in the genes table.
Old locus tagDWX03_00205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval40 584-42 608 nt2 025 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 530-45 512 ntGCF_003460315::NZ_QRXJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span37 530-45 512 nt7 983 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 530 nt45 512 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DWX03_RS00200GCF_003460315#DWX03_RS00200
HKHybrid
37 530-40 481 nt · Forward (+)
DWX03_RS00205GCF_003460315#DWX03_RS00205
HKHybridCurrent focus
40 584-42 608 nt · Forward (+)
DWX03_RS00210GCF_003460315#DWX03_RS00210
HKHybrid
42 645-45 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS00205The current gene is the representative for this cluster.
PFAM architectureSnoaL_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0834083
Simplified PFAM architecture for HKOC_0834083
PFAM domain coverage: 400 / 674 aa (59.3%)
1 aa674 aa
SnoaL_3HisKAHATPase_cResponse_reg
- Simplified architecture: SnoaL_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SnoaL_3[27-130] | HisKA[297-362] | HATPase_c[410-525] | Response_reg[552-665]
- Domain count: 4
- Matched identifier: HKOC_0834083
- Positioned domains: SnoaL_3 27-130 ; HisKA 297-362 ; HATPase_c 410-525 ; Response_reg 552-665
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS00205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key