1 Response_reg#1
4-123 aa · 120 aa · 50.0% of protein
Raw token
Response_reg:4:2.16e-18:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS01440
Response regulator LytTR family
Coprococcus comes · GCF_003460315
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003460315#DWX03_RS01440Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 240 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-219 aa · 74 aa · 30.8% of protein
Raw token
LytTR:146:0.00000000045:219:77:98- Raw architecture: Response_reg:4:2.16e-18:123:121:111#LytTR:146:0.00000000045:219:77:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003460315::NZ_QRXJ01000002.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11273-11995Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_01440RefSeq proteinWP_117824622.1
Context group ID
GCF_003460315::NZ_QRXJ01000002.1::G00019Context members
DWX03_RS01440
Partner locus tags
DWX03_RS01440
Partner old locus tags
DWX03_01440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117824622.1Primary protein accession used for annex mappings.
UniProt accessionA0A3R6AWD3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3R6AWD3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS01440Primary locus identifier stored in the genes table.
Old locus tagDWX03_01440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000002.1Sequence record reported by the local genomic context database.
Genomic interval11 273-11 995 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 273-11 995 ntGCF_003460315::NZ_QRXJ01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span11 273-11 995 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 273 nt11 995 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWX03_RS01440GCF_003460315#DWX03_RS01440
RRLytTRCurrent focus
11 273-11 995 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS01440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888293
Simplified PFAM architecture for RROC_0888293
PFAM domain coverage: 205 / 240 aa (85.4%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[146-231]
- Domain count: 2
- Matched identifier: RROC_0888293
- Positioned domains: Response_reg 4-122 ; Response_reg 4-122 ; LytTR 146-231 ; LytTR 146-231
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS01440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key