1 PBPb#1
44-260 aa · 217 aa · 22.7% of protein
Raw token
PBPb:44:3.58e-29:260:228:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX03_RS00210
Histidine kinase, Hybrid
Coprococcus comes · GCF_003460315
ClassHKTypeHybridLength955 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003460315#DWX03_RS00210Stable P2CS identifier used across views.
GenomeGCF_003460315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
PBPbSBP_bac_3HisKAHATPase_cResponse_reg
Protein length955 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage728 / 955 aa (76.2%)Merged over positioned domains only.
Domain description1 PBPb,1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa955 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.5% of protein
Raw token
SBP_bac_3:282:0.000000000000179:486:219:2243 HisKA#3
571-639 aa · 69 aa · 7.2% of protein
Raw token
HisKA:571:8.48e-19:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw token
HATPase_c:685:4.06e-27:803:119:1095 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:829:6.79e-30:946:118:111- Raw architecture: PBPb:44:3.58e-29:260:228:219#SBP_bac_3:282:0.000000000000179:486:219:224#HisKA:571:8.48e-19:639:69:64#HATPase_c:685:4.06e-27:803:119:109#Response_reg:829:6.79e-30:946:118:111
- Domain description: 1 PBPb,1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003460315::NZ_QRXJ01000001.1::G00002
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span37530-45512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX03_00210RefSeq proteinWP_117834017.1
Context group ID
GCF_003460315::NZ_QRXJ01000001.1::G00002Context members
DWX03_RS00200DWX03_RS00205DWX03_RS00210
Partner locus tags
DWX03_RS00200DWX03_RS00205DWX03_RS00210
Partner old locus tags
DWX03_00200DWX03_00205DWX03_00210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117834017.1Primary protein accession used for annex mappings.
UniProt accessionA0A412QPD5Primary UniProt accession resolved in the annex database.
UniProt IDA0A412QPD5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX03_RS00210Primary locus identifier stored in the genes table.
Old locus tagDWX03_00210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRXJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval42 645-45 512 nt2 868 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 530-45 512 ntGCF_003460315::NZ_QRXJ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003460315::NZ_QRXJ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRXJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span37 530-45 512 nt7 983 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 530 nt45 512 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DWX03_RS00200GCF_003460315#DWX03_RS00200
HKHybrid
37 530-40 481 nt · Forward (+)
DWX03_RS00205GCF_003460315#DWX03_RS00205
HKHybrid
40 584-42 608 nt · Forward (+)
DWX03_RS00210GCF_003460315#DWX03_RS00210
HKHybridCurrent focus
42 645-45 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460315#DWX03_RS00210The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0322162
Simplified PFAM architecture for HKOC_0322162
PFAM domain coverage: 512 / 955 aa (53.6%)
1 aa955 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[52-261] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0322162
- Positioned domains: SBP_bac_3 52-261 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_003460315#DWX03_RS00210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_003460315
AssemblyASM346031v1 · Scaffoldhaploid
Genome composition3 160 739 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key