1 Response_reg#1
3-113 aa · 111 aa · 44.8% of protein
Raw token
Response_reg:3:2.23e-24:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY33_RS01000
Response regulator LytTR family
Dorea formicigenerans · GCF_003458475
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003458475#DWY33_RS01000Stable P2CS identifier used across views.
GenomeGCF_003458475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 248 aa (85.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 LytTR#2
147-246 aa · 100 aa · 40.3% of protein
Raw token
LytTR:147:1.69e-25:246:101:98- Raw architecture: Response_reg:3:2.23e-24:113:115:111#LytTR:147:1.69e-25:246:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003458475::NZ_QRUK01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span235791-238246Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY33_01000RefSeq proteinWP_118396946.1
Context group ID
GCF_003458475::NZ_QRUK01000001.1::G00003Context members
DWY33_RS00995DWY33_RS01000
Partner locus tags
DWY33_RS00995DWY33_RS01000
Partner old locus tags
DWY33_00995DWY33_01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118396946.1Primary protein accession used for annex mappings.
UniProt accessionA0A412F7F6Primary UniProt accession resolved in the annex database.
UniProt IDA0A412F7F6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY33_RS01000Primary locus identifier stored in the genes table.
Old locus tagDWY33_01000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRUK01000001.1Sequence record reported by the local genomic context database.
Genomic interval237 500-238 246 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span235 791-238 246 ntGCF_003458475::NZ_QRUK01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003458475::NZ_QRUK01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRUK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span235 791-238 246 nt2 456 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 791 nt238 246 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY33_RS00995GCF_003458475#DWY33_RS00995
HKClassic
235 791-237 503 nt · Forward (+)
DWY33_RS01000GCF_003458475#DWY33_RS01000
RRLytTRCurrent focus
237 500-238 246 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003458475#DWY33_RS01000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746249
Simplified PFAM architecture for RROC_0746249
PFAM domain coverage: 208 / 248 aa (83.9%)
1 aa248 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[148-245]
- Domain count: 2
- Matched identifier: RROC_0746249
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 148-245 ; LytTR 148-245
Cluster members and taxonomy
Representative gene: GCF_003458475#DWY33_RS01000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003458475
AssemblyASM345847v1 · Scaffoldhaploid
Genome composition3 302 668 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 53 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key