1 HisKA#1
88-154 aa · 67 aa · 21.9% of protein
Raw token
HisKA:88:0.000000000268:154:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY33_RS00350
Histidine kinase, Classic
Dorea formicigenerans · GCF_003458475
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003458475#DWY33_RS00350Stable P2CS identifier used across views.
GenomeGCF_003458475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 306 aa (56.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-305 aa · 106 aa · 34.6% of protein
Raw token
HATPase_c:200:4.06e-17:305:107:109- Raw architecture: HisKA:88:0.000000000268:154:67:64#HATPase_c:200:4.06e-17:305:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003458475::NZ_QRUK01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79818-81393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY33_00350RefSeq proteinWP_242995162.1
Context group ID
GCF_003458475::NZ_QRUK01000001.1::G00002Context members
DWY33_RS00345DWY33_RS00350
Partner locus tags
DWY33_RS00345DWY33_RS00350
Partner old locus tags
DWY33_00345DWY33_00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242995162.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY33_RS00350Primary locus identifier stored in the genes table.
Old locus tagDWY33_00350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRUK01000001.1Sequence record reported by the local genomic context database.
Genomic interval80 473-81 393 nt921 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 818-81 393 ntGCF_003458475::NZ_QRUK01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003458475::NZ_QRUK01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRUK01000001.1All displayed genes belong to this local TCS context.
Neighborhood span79 818-81 393 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 818 nt81 393 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY33_RS00345GCF_003458475#DWY33_RS00345
RROmpR
79 818-80 471 nt · Forward (+)
DWY33_RS00350GCF_003458475#DWY33_RS00350
HKClassicCurrent focus
80 473-81 393 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436235#DXD84_RS01155Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881432
Simplified PFAM architecture for HKOC_2881432
PFAM domain coverage: 173 / 306 aa (56.5%)
1 aa306 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-154] | HATPase_c[200-305]
- Domain count: 2
- Matched identifier: HKOC_2881432
- Positioned domains: HisKA 88-154 ; HATPase_c 200-305
Cluster members and taxonomy
Representative gene: GCF_003436235#DXD84_RS01155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003458475
AssemblyASM345847v1 · Scaffoldhaploid
Genome composition3 302 668 bp · 40,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 53 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key