1 HAMP#1
190-259 aa · 70 aa · 14.0% of protein
Raw token
HAMP:190:0.000000000000172:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS08365
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS08365Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 499 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 His_kinase#2
288-367 aa · 80 aa · 16.0% of protein
Raw token
His_kinase:288:2.41e-26:367:80:803 HATPase_c#3
386-493 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:386:0.0000000000000918:493:111:109- Raw architecture: HAMP:190:0.000000000000172:259:70:69#His_kinase:288:2.41e-26:367:80:80#HATPase_c:386:0.0000000000000918:493:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000008.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21777-24914Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_08365RefSeq proteinWP_117591885.1
Context group ID
GCF_003457595::NZ_QRSS01000008.1::G00046Context members
DWZ12_RS08360DWZ12_RS08365
Partner locus tags
DWZ12_RS08360DWZ12_RS08365
Partner old locus tags
DWZ12_08360DWZ12_08365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117591885.1Primary protein accession used for annex mappings.
UniProt accessionA0A395ZZB0Primary UniProt accession resolved in the annex database.
UniProt IDA0A395ZZB0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS08365Primary locus identifier stored in the genes table.
Old locus tagDWZ12_08365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000008.1Sequence record reported by the local genomic context database.
Genomic interval23 415-24 914 nt1 500 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 777-24 914 ntGCF_003457595::NZ_QRSS01000008.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000008.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000008.1All displayed genes belong to this local TCS context.
Neighborhood span21 777-24 914 nt3 138 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 777 nt24 914 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS08360GCF_003457595#DWZ12_RS08360
RRunclassified
21 777-23 372 nt · Reverse (-)
DWZ12_RS08365GCF_003457595#DWZ12_RS08365
HKClassicCurrent focus
23 415-24 914 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS08365The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1482547
Simplified PFAM architecture for HKOC_1482547
PFAM domain coverage: 240 / 499 aa (48.1%)
1 aa499 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-259] | His_kinase[288-364] | HATPase_c[385-493]
- Domain count: 3
- Matched identifier: HKOC_1482547
- Positioned domains: HAMP 206-259 ; His_kinase 288-364 ; HATPase_c 385-493
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS08365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key