1 Response_reg#1
35-115 aa · 81 aa · 64.8% of protein
Raw token
Response_reg:35:0.00000000809:115:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS03085
Response regulator, CheY family
Blautia obeum · GCF_003457595
ClassRRTypeCheYLength125 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003457595#DWZ12_RS03085Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length125 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage81 / 125 aa (64.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa125 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:35:0.00000000809:115:86:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003457595::NZ_QRSS01000003.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38352-38729Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_03090RefSeq proteinWP_233438924.1
Context group ID
GCF_003457595::NZ_QRSS01000003.1::G00030Context members
DWZ12_RS03085
Partner locus tags
DWZ12_RS03085
Partner old locus tags
DWZ12_03090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_233438924.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS03085Primary locus identifier stored in the genes table.
Old locus tagDWZ12_03090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000003.1Sequence record reported by the local genomic context database.
Genomic interval38 352-38 729 nt378 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span38 352-38 729 ntGCF_003457595::NZ_QRSS01000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span38 352-38 729 nt378 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 352 nt38 729 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ12_RS03085GCF_003457595#DWZ12_RS03085
RRCheYCurrent focus
38 352-38 729 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS03085The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2372405
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS03085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key