1 HAMP#1
185-254 aa · 70 aa · 14.1% of protein
Raw token
HAMP:185:0.00000705:254:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ12_RS07605
Histidine kinase, Classic
Blautia obeum · GCF_003457595
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003457595#DWZ12_RS07605Stable P2CS identifier used across views.
GenomeGCF_003457595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 495 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
288-367 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:288:2.4e-30:367:80:803 HATPase_c#3
386-492 aa · 107 aa · 21.6% of protein
Raw token
HATPase_c:386:0.0000000067:492:108:109- Raw architecture: HAMP:185:0.00000705:254:70:69#His_kinase:288:2.4e-30:367:80:80#HATPase_c:386:0.0000000067:492:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003457595::NZ_QRSS01000007.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41166-44256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ12_07605RefSeq proteinWP_118044611.1
Context group ID
GCF_003457595::NZ_QRSS01000007.1::G00043Context members
DWZ12_RS07605DWZ12_RS07610
Partner locus tags
DWZ12_RS07605DWZ12_RS07610
Partner old locus tags
DWZ12_07605DWZ12_07610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118044611.1Primary protein accession used for annex mappings.
UniProt accessionA0A411ZQZ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A411ZQZ6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ12_RS07605Primary locus identifier stored in the genes table.
Old locus tagDWZ12_07605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRSS01000007.1Sequence record reported by the local genomic context database.
Genomic interval41 166-42 653 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 166-44 256 ntGCF_003457595::NZ_QRSS01000007.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003457595::NZ_QRSS01000007.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRSS01000007.1All displayed genes belong to this local TCS context.
Neighborhood span41 166-44 256 nt3 091 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 166 nt44 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ12_RS07605GCF_003457595#DWZ12_RS07605
HKClassicCurrent focus
41 166-42 653 nt · Forward (+)
DWZ12_RS07610GCF_003457595#DWZ12_RS07610
RRunclassified
42 670-44 256 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457595#DWZ12_RS07605The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1505467
Simplified PFAM architecture for HKOC_1505467
PFAM domain coverage: 188 / 495 aa (38.0%)
1 aa495 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[288-367] | HATPase_c[385-492]
- Domain count: 2
- Matched identifier: HKOC_1505467
- Positioned domains: His_kinase 288-367 ; HATPase_c 385-492
Cluster members and taxonomy
Representative gene: GCF_003457595#DWZ12_RS07605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_003457595
AssemblyASM345759v1 · Scaffoldhaploid
Genome composition3 533 904 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 89 · HK 49 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key