1 Response_reg#1
7-119 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:7:2.75e-20:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXC88_RS24895
Response regulator NarL family
Hungatella hathewayi · GCF_003437645
ClassRRTypeNarLLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003437645#DXC88_RS24895Stable P2CS identifier used across views.
GenomeGCF_003437645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 232 aa (69.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-204 aa · 47 aa · 20.3% of protein
Raw token
HTH_LUXR:158:0.0000011:204:47:58- Raw architecture: Response_reg:7:2.75e-20:119:113:111#HTH_LUXR:158:0.0000011:204:47:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003437645::NZ_QSRE01000020.1::G00074
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15544-16242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXC88_24880RefSeq proteinWP_117633011.1
Context group ID
GCF_003437645::NZ_QSRE01000020.1::G00074Context members
DXC88_RS24895
Partner locus tags
DXC88_RS24895
Partner old locus tags
DXC88_24880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117633011.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P004Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P004_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXC88_RS24895Primary locus identifier stored in the genes table.
Old locus tagDXC88_24880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QSRE01000020.1Sequence record reported by the local genomic context database.
Genomic interval15 544-16 242 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 544-16 242 ntGCF_003437645::NZ_QSRE01000020.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003437645::NZ_QSRE01000020.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QSRE01000020.1All displayed genes belong to this local TCS context.
Neighborhood span15 544-16 242 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 544 nt16 242 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXC88_RS24895GCF_003437645#DXC88_RS24895
RRNarLCurrent focus
15 544-16 242 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS24895The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1129366
Simplified PFAM architecture for RROC_1129366
PFAM domain coverage: 113 / 232 aa (48.7%)
1 aa232 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-119]
- Domain count: 1
- Matched identifier: RROC_1129366
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS24895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003437645
AssemblyASM343764v1 · Scaffoldhaploid
Genome composition7 708 434 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 289 · HK 144 · RR 142CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key